Dec 02 10:27:10.126 INFO testing yacrd-0.4.1 against master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61 for beta-1.31-5
Dec 02 10:27:10.126 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.31-5/worker-1/master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-1/beta-1.31-5/master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 02 10:27:10.511 INFO [stdout] 0a76223debb9830da17068f09a3b861e6354701ba1eb2c3908fc6a61e706af3b
Dec 02 10:27:10.513 INFO running `"docker" "start" "-a" "0a76223debb9830da17068f09a3b861e6354701ba1eb2c3908fc6a61e706af3b"`
Dec 02 10:27:12.099 INFO [stderr] usermod: no changes
Dec 02 10:27:12.323 INFO [stderr]    Compiling bv v0.7.4
Dec 02 10:27:12.327 INFO [stderr]    Compiling bzip2-sys v0.1.7
Dec 02 10:27:12.327 INFO [stderr]    Compiling lzma-sys v0.1.11
Dec 02 10:27:12.327 INFO [stderr]    Compiling itertools v0.6.5
Dec 02 10:27:12.355 INFO [stderr]    Compiling serde v1.0.80
Dec 02 10:27:19.153 INFO [stderr]    Compiling xz2 v0.1.6
Dec 02 10:27:20.855 INFO [stderr]    Compiling bzip2 v0.3.3
Dec 02 10:27:20.938 INFO [stderr]    Compiling ndarray v0.9.1
Dec 02 10:27:32.547 INFO [stderr]    Compiling multimap v0.4.0
Dec 02 10:27:32.547 INFO [stderr]    Compiling csv v1.0.2
Dec 02 10:27:32.547 INFO [stderr]    Compiling vec_map v0.8.1
Dec 02 10:27:32.548 INFO [stderr]    Compiling serde_json v1.0.33
Dec 02 10:27:38.264 INFO [stderr]    Compiling clap v2.32.0
Dec 02 10:27:40.079 INFO [stderr]    Compiling bio v0.21.0
Dec 02 10:28:03.661 INFO [stderr]    Compiling yacrd v0.4.1 (/source)
Dec 02 10:28:11.182 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 59.06s
Dec 02 10:28:11.194 INFO [stderr] su: No module specific data is present
Dec 02 10:28:11.760 INFO running `"docker" "inspect" "0a76223debb9830da17068f09a3b861e6354701ba1eb2c3908fc6a61e706af3b"`
Dec 02 10:28:11.933 INFO running `"docker" "rm" "-f" "0a76223debb9830da17068f09a3b861e6354701ba1eb2c3908fc6a61e706af3b"`
Dec 02 10:28:12.054 INFO [stdout] 0a76223debb9830da17068f09a3b861e6354701ba1eb2c3908fc6a61e706af3b
Dec 02 10:28:12.061 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.31-5/worker-1/master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-1/beta-1.31-5/master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 02 10:28:12.301 INFO [stdout] dd813fe8588d84fe9c9351379b18ad2e11c264b60c04ecb22ade8aee7a91fa09
Dec 02 10:28:12.303 INFO running `"docker" "start" "-a" "dd813fe8588d84fe9c9351379b18ad2e11c264b60c04ecb22ade8aee7a91fa09"`
Dec 02 10:28:12.935 INFO [stderr] usermod: no changes
Dec 02 10:28:13.110 INFO [stderr]    Compiling yacrd v0.4.1 (/source)
Dec 02 10:28:20.807 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 7.83s
Dec 02 10:28:20.815 INFO [stderr] su: No module specific data is present
Dec 02 10:28:21.181 INFO running `"docker" "inspect" "dd813fe8588d84fe9c9351379b18ad2e11c264b60c04ecb22ade8aee7a91fa09"`
Dec 02 10:28:21.291 INFO running `"docker" "rm" "-f" "dd813fe8588d84fe9c9351379b18ad2e11c264b60c04ecb22ade8aee7a91fa09"`
Dec 02 10:28:21.410 INFO [stdout] dd813fe8588d84fe9c9351379b18ad2e11c264b60c04ecb22ade8aee7a91fa09
Dec 02 10:28:21.413 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/beta-1.31-5/worker-1/master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-1/beta-1.31-5/master#8940af3cea4a9a9deabcaf843b2f8cad9a83fc61:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +8940af3cea4a9a9deabcaf843b2f8cad9a83fc61-alt test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 02 10:28:21.655 INFO [stdout] efcbe768a94e43cf29123b892e221c8030a840696244a9d910b1dd1a3d45c5ea
Dec 02 10:28:21.661 INFO running `"docker" "start" "-a" "efcbe768a94e43cf29123b892e221c8030a840696244a9d910b1dd1a3d45c5ea"`
Dec 02 10:28:22.431 INFO [stderr] usermod: no changes
Dec 02 10:28:22.599 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.14s
Dec 02 10:28:22.615 INFO [stderr]      Running /target/debug/deps/yacrd-a296c1fc4664ed94
Dec 02 10:28:22.618 INFO [stdout] 
Dec 02 10:28:22.618 INFO [stdout] running 32 tests
Dec 02 10:28:22.619 INFO [stdout] test chimera::test::notcovered_overlap_extremity ... ok
Dec 02 10:28:22.626 INFO [stdout] test chimera::test::mapping2read2mapping ... ok
Dec 02 10:28:22.626 INFO [stdout] test chimera::test::formating_gap ... ok
Dec 02 10:28:22.626 INFO [stdout] test chimera::test::find_not_covered ... ok
Dec 02 10:28:22.627 INFO [stdout] test chimera::test::find_chimera_mhap_min_mers_float ... ok
Dec 02 10:28:22.628 INFO [stdout] test file::test::compression_from_input_or_cli ... ok
Dec 02 10:28:22.628 INFO [stdout] test chimera::test::find_chimera_json_output ... ok
Dec 02 10:28:22.630 INFO [stdout] test chimera::test::find_chimera ... ok
Dec 02 10:28:22.634 INFO [stdout] test io::paf::test::read_sam_field ... ok
Dec 02 10:28:22.634 INFO [stdout] test chimera::test::find_chimera_cov_1 ... ok
Dec 02 10:28:22.634 INFO [stdout] test chimera::test::notcovered_prior_to_chimera ... ok
Dec 02 10:28:22.634 INFO [stdout] test io::paf::test::read ... ok
Dec 02 10:28:22.634 INFO [stdout] test postdetection::fasta::test::filtred ... ok
Dec 02 10:28:22.634 INFO [stdout] test io::mhap::test::write ... ok
Dec 02 10:28:22.634 INFO [stdout] test file::test::compression_from_file ... ok
Dec 02 10:28:22.634 INFO [stdout] test io::paf::test::write ... ok
Dec 02 10:28:22.635 INFO [stdout] test io::mhap::test::read ... ok
Dec 02 10:28:22.635 INFO [stdout] test postdetection::fastq::test::filtred ... ok
Dec 02 10:28:22.635 INFO [stdout] test postdetection::fasta::test::extracted ... ok
Dec 02 10:28:22.636 INFO [stdout] test postdetection::fasta::test::split ... ok
Dec 02 10:28:22.636 INFO [stdout] test postdetection::fastq::test::extracted ... ok
Dec 02 10:28:22.638 INFO [stdout] test postdetection::fasta::test::fasta_shorter_than_position ... ok
Dec 02 10:28:22.638 INFO [stdout] test io::paf::test::write_sam_field ... ok
Dec 02 10:28:22.638 INFO [stdout] test postdetection::paf::test::extracted ... ok
Dec 02 10:28:22.638 INFO [stdout] test postdetection::test::out_name ... ok
Dec 02 10:28:22.638 INFO [stdout] test postdetection::paf::test::filtred ... ok
Dec 02 10:28:22.640 INFO [stdout] test postdetection::fastq::test::fastq ... ok
Dec 02 10:28:22.640 INFO [stdout] test postdetection::mhap::test::extracted ... ok
Dec 02 10:28:22.640 INFO [stdout] test postdetection::mhap::test::filtred ... ok
Dec 02 10:28:22.647 INFO [stdout] test utils::test::filename_based ... ok
Dec 02 10:28:22.653 INFO [stdout] test utils::test::filename_based_compressed ... ok
Dec 02 10:28:22.653 INFO [stdout] test utils::test::filename_mapping_only ... ok
Dec 02 10:28:22.653 INFO [stdout] 
Dec 02 10:28:22.653 INFO [stdout] test result: ok. 32 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Dec 02 10:28:22.653 INFO [stdout] 
Dec 02 10:28:22.654 INFO [stderr] su: No module specific data is present
Dec 02 10:28:23.136 INFO running `"docker" "inspect" "efcbe768a94e43cf29123b892e221c8030a840696244a9d910b1dd1a3d45c5ea"`
Dec 02 10:28:23.337 INFO running `"docker" "rm" "-f" "efcbe768a94e43cf29123b892e221c8030a840696244a9d910b1dd1a3d45c5ea"`
Dec 02 10:28:23.435 INFO [stdout] efcbe768a94e43cf29123b892e221c8030a840696244a9d910b1dd1a3d45c5ea
